PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 313aa    MW: 33725.5 Da    PI: 6.224
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145510.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702217.92.3e-67902432154
          DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssa 94 
                     rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqq ++++s  + +    ++ +kr+r++   ++  +ss + +s 
  XP_009145510.1  90 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQVQMSTSGGSGNGggGSSIAKRHRDT---TRPGTSSFRSPSD 181
                     67899****************************************************9998887776677778888875...5555666677888 PP

          DUF702  95 eskkeletsslPeevsseavfrcvrvssvddgeee..laYqtavsigGhvfkGiLydqGlee 154
                     ++  e+  +s+P+evss+a+f+cv++s+vddge++  +aYqt+v+igGh+fkGiLydqG+e+
  XP_009145510.1 182 SAGLEMGEASFPPEVSSDALFQCVKMSGVDDGEDDgqYAYQTTVNIGGHLFKGILYDQGPES 243
                     8999***************************665334***********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.4E-6193242IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.1E-2795137IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.8E-27192241IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSGMFSLGGN NNNNNNGYEE EENQQQQNTN WAWYRSNTNT NNITPGSSQW QIPPEQQLLM  60
HHHQSQPQQQ SLDLYPGHQI DVSDVATSSR SITISCRDCG NQAKKDCTHM RCRTCCKSRG  120
FDCSTHVRST WIPVARRRER QQQVQMSTSG GSGNGGGGSS IAKRHRDTTR PGTSSFRSPS  180
DSAGLEMGEA SFPPEVSSDA LFQCVKMSGV DDGEDDGQYA YQTTVNIGGH LFKGILYDQG  240
PESSYVSGGS GGSDHQSSSA GGGNPINTPA MADGGGGSST MFVDPNASGY YSSNMATMFV  300
PPGTQFYQNP PRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052640.0GU205264.1 Brassica rapa subsp. pekinensis stylish 2a (STY2a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145510.10.0PREDICTED: protein SHI RELATED SEQUENCE 2
RefseqXP_013665838.10.0PREDICTED: protein SHI RELATED SEQUENCE 2-like
SwissprotO655171e-143SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBLD2KC730.0D2KC73_BRARP; Stylish 2a
STRINGBra011675.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136481727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.11e-115Lateral root primordium (LRP) protein-related